PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG048800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 148aa    MW: 16043.5 Da    PI: 4.6244
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG048800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS68.31.5e-212144226373
                 GRAS 226 evLklvkslsPkvvvvveqe...adhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhe 310
                          ++L  vk l+Pk+v+++eqe   +d++ ++F+e f+e  ++++a+++sle+ +           vE+e lg+ i+++v + +        
  Pavir.3KG048800.1.p   2 QLLGSVKILRPKLVILIEQEpfrIDRGLAPFAEFFCEVQQHFAAMLESLESCFRDGGygACLGPVEKETLGPMIEDAVRQYEPL----AG 87 
                          5899****************98889999************************977767777889**************988776....22 PP

                 GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                +  e  GF++ +ls+++++q k+l   ++ +g+ v +e+g l l+W++rpL+svS+W
  Pavir.3KG048800.1.p  88 -----GAGAELEGFRACELSSFNVAQGKMLAGLFS-RGFGVAQEEGRLALCWNSRPLTSVSVW 144
                          .....3456889**********************9.*************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.1E-192144IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MQLLGSVKIL RPKLVILIEQ EPFRIDRGLA PFAEFFCEVQ QHFAAMLESL ESCFRDGGYG  60
ACLGPVEKET LGPMIEDAVR QYEPLAGGAG AELEGFRACE LSSFNVAQGK MLAGLFSRGF  120
GVAQEEGRLA LCWNSRPLTS VSVWSPV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978326.21e-83PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLK3YE271e-83K3YE27_SETIT; Uncharacterized protein
STRINGSi012487m4e-83(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP171141111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-09RGA-like 2